STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWU55_579Anti-sigma-factor antagonist domain-containing protein; Scaffold_1_210. (169 aa)    
Predicted Functional Partners:
AWU55_580
Two-component response regulator; Scaffold_1_211.
 
 0.999
AWU55_1951
ABC transporter permease; Scaffold_19_31.
   
 0.985
AWU55_404
Two-component system, NarL family, sensor histidine kinase BarA; Scaffold_1_35.
  
 
 0.978
AWU55_1355
Hpt sensor hybrid histidine kinase; Scaffold_7_56.
  
 
 0.977
AWU55_2708
Signal transduction histidine kinase; Scaffold_55_8.
  
 
 0.977
AWU55_1168
Putative ABC transport system ATP-binding protein; Scaffold_5_89.
   
  0.974
AWU55_1952
Putative ABC transport system ATP-binding protein; Scaffold_19_32.
   
  0.974
AWU55_1170
Putative ABC transport system substrate-binding protein; Scaffold_5_91.
  
  0.963
AWU55_1953
ABC transporter permease; Scaffold_19_33.
  
  0.963
AWU55_1169
Putative ABC transport system permease protein; Scaffold_5_90.
   
  0.962
Your Current Organism:
Halomonadaceae bacterium T822
NCBI taxonomy Id: 1783518
Other names: H. bacterium T82-2, Halomonadaceae bacterium T82-2
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