Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDG81853.1 | SDG91747.1 | SAMN04488062_102255 | SAMN04488062_10376 | Hypothetical protein. | DNA-3-methyladenine glycosylase II. | 0.850 |
SDG81853.1 | SDH23363.1 | SAMN04488062_102255 | SAMN04488062_105132 | Hypothetical protein. | TIGR02757 family protein. | 0.801 |
SDG81853.1 | SDH47516.1 | SAMN04488062_102255 | SAMN04488062_10854 | Hypothetical protein. | DNA polymerase-3 subunit delta'. | 0.707 |
SDG81853.1 | SDH48528.1 | SAMN04488062_102255 | SAMN04488062_10882 | Hypothetical protein. | Hypothetical protein. | 0.742 |
SDG81853.1 | SDH65779.1 | SAMN04488062_102255 | SAMN04488062_11154 | Hypothetical protein. | DNA ligase D, 3'-phosphoesterase domain-containing protein. | 0.862 |
SDG81853.1 | SDH84449.1 | SAMN04488062_102255 | SAMN04488062_11616 | Hypothetical protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.900 |
SDG81853.1 | SDI22650.1 | SAMN04488062_102255 | SAMN04488062_1295 | Hypothetical protein. | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.868 |
SDG81853.1 | nth | SAMN04488062_102255 | SAMN04488062_105153 | Hypothetical protein. | Endonuclease-3; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.801 |
SDG81853.1 | polA | SAMN04488062_102255 | SAMN04488062_101246 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.895 |
SDG81853.1 | ung | SAMN04488062_102255 | SAMN04488062_11821 | Hypothetical protein. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.763 |
SDG91747.1 | SDG81853.1 | SAMN04488062_10376 | SAMN04488062_102255 | DNA-3-methyladenine glycosylase II. | Hypothetical protein. | 0.850 |
SDG91747.1 | SDH23363.1 | SAMN04488062_10376 | SAMN04488062_105132 | DNA-3-methyladenine glycosylase II. | TIGR02757 family protein. | 0.415 |
SDG91747.1 | SDH48528.1 | SAMN04488062_10376 | SAMN04488062_10882 | DNA-3-methyladenine glycosylase II. | Hypothetical protein. | 0.448 |
SDG91747.1 | nth | SAMN04488062_10376 | SAMN04488062_105153 | DNA-3-methyladenine glycosylase II. | Endonuclease-3; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.415 |
SDG91747.1 | polA | SAMN04488062_10376 | SAMN04488062_101246 | DNA-3-methyladenine glycosylase II. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.562 |
SDH23363.1 | SDG81853.1 | SAMN04488062_105132 | SAMN04488062_102255 | TIGR02757 family protein. | Hypothetical protein. | 0.801 |
SDH23363.1 | SDG91747.1 | SAMN04488062_105132 | SAMN04488062_10376 | TIGR02757 family protein. | DNA-3-methyladenine glycosylase II. | 0.415 |
SDH23363.1 | SDH48528.1 | SAMN04488062_105132 | SAMN04488062_10882 | TIGR02757 family protein. | Hypothetical protein. | 0.492 |
SDH23363.1 | SDI22650.1 | SAMN04488062_105132 | SAMN04488062_1295 | TIGR02757 family protein. | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.447 |
SDH23363.1 | polA | SAMN04488062_105132 | SAMN04488062_101246 | TIGR02757 family protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.642 |
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