STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG91437.1CarboxypepD_reg-like domain-containing protein. (900 aa)    
Predicted Functional Partners:
SDG91463.1
GLPGLI family protein.
 
     0.904
SDG91541.1
GLPGLI family protein.
 
     0.774
SDI11556.1
GLPGLI family protein.
 
     0.766
SDG91878.1
GLPGLI family protein.
  
     0.690
SDG91490.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 
     0.644
SDH57375.1
Hypothetical protein.
  
  0.585
SDI10592.1
GLPGLI family protein.
 
     0.558
SDH64533.1
Hypothetical protein.
  
     0.553
SDG91516.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
     0.548
SDG83760.1
Protein TonB.
   
  0.532
Your Current Organism:
Flavobacterium omnivorum
NCBI taxonomy Id: 178355
Other names: AS 1.2747, F. omnivorum, Flavobacterium omnivorum Zhu et al. 2003, JCM 11313, strain ZF-8
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