STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH25847.1Iron complex outermembrane recepter protein. (1137 aa)    
Predicted Functional Partners:
SDG83760.1
Protein TonB.
  
  0.588
SDH77787.1
Carboxypeptidase regulatory-like domain-containing protein.
  
     0.583
SDH25817.1
FecR family protein.
 
    0.562
SDH65282.1
SusD family protein.
  
 
   0.558
SDG89515.1
Protein TonB.
   
  0.532
SDH57375.1
Hypothetical protein.
   
  0.532
SDI22970.1
TonB protein C-terminal.
   
  0.532
SDH65320.1
Starch-binding associating with outer membrane.
  
 
   0.517
uvrB
Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
       0.497
SDH06220.1
Starch-binding associating with outer membrane.
  
 
   0.486
Your Current Organism:
Flavobacterium omnivorum
NCBI taxonomy Id: 178355
Other names: AS 1.2747, F. omnivorum, Flavobacterium omnivorum Zhu et al. 2003, JCM 11313, strain ZF-8
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