Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDG90346.1 | SDH20688.1 | SAMN04488062_10332 | SAMN04488062_10538 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Anthranilate synthase component 1. | 0.936 |
SDG90346.1 | SDH20717.1 | SAMN04488062_10332 | SAMN04488062_10539 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Anthranilate synthase component 2. | 0.954 |
SDG90346.1 | SDH53819.1 | SAMN04488062_10332 | SAMN04488062_10954 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Para-aminobenzoate synthetase component 1. | 0.936 |
SDG90346.1 | SDH64630.1 | SAMN04488062_10332 | SAMN04488062_11126 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Isochorismate synthase. | 0.961 |
SDG90346.1 | aroC | SAMN04488062_10332 | SAMN04488062_11554 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.998 |
SDG90346.1 | trpA | SAMN04488062_10332 | SAMN04488062_10548 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.528 |
SDG90346.1 | trpB | SAMN04488062_10332 | SAMN04488062_10544 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.478 |
SDG90346.1 | trpC | SAMN04488062_10332 | SAMN04488062_10542 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Indole-3-glycerol phosphate synthase; Belongs to the TrpC family. | 0.728 |
SDG90346.1 | trpD | SAMN04488062_10332 | SAMN04488062_10540 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.872 |
SDG90346.1 | trpF | SAMN04488062_10332 | SAMN04488062_10543 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Phosphoribosylanthranilate isomerase; Belongs to the TrpF family. | 0.716 |
SDH20688.1 | SDG90346.1 | SAMN04488062_10538 | SAMN04488062_10332 | Anthranilate synthase component 1. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.936 |
SDH20688.1 | SDH20717.1 | SAMN04488062_10538 | SAMN04488062_10539 | Anthranilate synthase component 1. | Anthranilate synthase component 2. | 0.999 |
SDH20688.1 | SDH53819.1 | SAMN04488062_10538 | SAMN04488062_10954 | Anthranilate synthase component 1. | Para-aminobenzoate synthetase component 1. | 0.919 |
SDH20688.1 | SDH64630.1 | SAMN04488062_10538 | SAMN04488062_11126 | Anthranilate synthase component 1. | Isochorismate synthase. | 0.927 |
SDH20688.1 | aroC | SAMN04488062_10538 | SAMN04488062_11554 | Anthranilate synthase component 1. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.944 |
SDH20688.1 | trpA | SAMN04488062_10538 | SAMN04488062_10548 | Anthranilate synthase component 1. | Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.934 |
SDH20688.1 | trpB | SAMN04488062_10538 | SAMN04488062_10544 | Anthranilate synthase component 1. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.961 |
SDH20688.1 | trpC | SAMN04488062_10538 | SAMN04488062_10542 | Anthranilate synthase component 1. | Indole-3-glycerol phosphate synthase; Belongs to the TrpC family. | 0.998 |
SDH20688.1 | trpD | SAMN04488062_10538 | SAMN04488062_10540 | Anthranilate synthase component 1. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.999 |
SDH20688.1 | trpF | SAMN04488062_10538 | SAMN04488062_10543 | Anthranilate synthase component 1. | Phosphoribosylanthranilate isomerase; Belongs to the TrpF family. | 0.971 |
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