STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH57833.1phospholipid/cholesterol/gamma-HCH transport system permease protein. (248 aa)    
Predicted Functional Partners:
SDH57791.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.998
SDH82434.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.988
SDH10568.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.962
SDH22133.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.957
SDH10539.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.944
SDH22160.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.935
SDH10589.1
phospholipid/cholesterol/gamma-HCH transport system permease protein; Belongs to the MlaE permease family.
  
  
 
0.839
SDH22106.1
phospholipid/cholesterol/gamma-HCH transport system permease protein; Belongs to the MlaE permease family.
  
  
 
0.838
SDH43286.1
Lipopolysaccharide export system ATP-binding protein.
 
  
  0.558
SDH57863.1
Glycosyl transferase family 2.
       0.552
Your Current Organism:
Flavobacterium omnivorum
NCBI taxonomy Id: 178355
Other names: AS 1.2747, F. omnivorum, Flavobacterium omnivorum Zhu et al. 2003, JCM 11313, strain ZF-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.