STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH93957.1Chemotaxis protein MotB. (277 aa)    
Predicted Functional Partners:
SDH55459.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
 
 0.921
SDI18226.1
Chemotaxis protein MotB.
  
  
 
0.898
SDH10924.1
Two-component system, chemotaxis family, CheB/CheR fusion protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
  
 0.873
SDH10727.1
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins.
  
  0.729
SDH93870.1
Type I restriction enzyme R protein N terminus (HSDR_N).
 
     0.673
SDI15474.1
PAS domain S-box-containing protein.
  
 
 0.671
SDH10995.1
Two-component system, chemotaxis family, response regulator CheB.
 
  
 0.669
SDG84606.1
Outer membrane protein OmpA.
  
  0.662
SDH93915.1
Hypothetical protein.
       0.652
SDI21541.1
Peptidase family C25.
  
  
 0.652
Your Current Organism:
Flavobacterium omnivorum
NCBI taxonomy Id: 178355
Other names: AS 1.2747, F. omnivorum, Flavobacterium omnivorum Zhu et al. 2003, JCM 11313, strain ZF-8
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