STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM87080.1Hypothetical protein. (133 aa)    
Predicted Functional Partners:
SHM09630.1
Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.
 
  
 0.643
SHM46244.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
  
     0.582
SHL91559.1
Colicin import membrane protein.
  
     0.580
SHN18847.1
Tyrosine phosphatase family protein.
  
     0.516
SHM02429.1
Threonine/homoserine/homoserine lactone efflux protein.
  
     0.515
SHL76154.1
Hypothetical protein.
  
     0.513
SHM87013.1
GLPGLI family protein.
 
     0.513
SHM90916.1
Hypothetical protein.
  
     0.501
SHM09551.1
Sulfite reductase (ferredoxin); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
    
 0.487
SHM61494.1
Rubredoxin.
    
 0.487
Your Current Organism:
Flavobacterium xinjiangense
NCBI taxonomy Id: 178356
Other names: AS 1.2749, F. xinjiangense, Flavobacterium xinjiangense Zhu et al. 2003, JCM 11314, strain ZF-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.