STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM87742.1Outer membrane protein. (202 aa)    
Predicted Functional Partners:
SHM88957.1
Hypothetical protein.
  
     0.705
SHN05106.1
Hypothetical protein.
  
     0.548
SHM11031.1
Protein TonB.
  
     0.537
SHM43885.1
Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.527
SHM83123.1
Putative DNA-binding domain-containing protein.
  
     0.524
SHM08002.1
Surface antigen.
  
    0.517
SHL88918.1
Protein of unknown function.
  
     0.511
SHN03544.1
Protein TonB.
  
     0.507
SHM17354.1
WD40-like Beta Propeller Repeat.
  
   0.499
SHM17022.1
WD40-like Beta Propeller Repeat.
  
   0.493
Your Current Organism:
Flavobacterium xinjiangense
NCBI taxonomy Id: 178356
Other names: AS 1.2749, F. xinjiangense, Flavobacterium xinjiangense Zhu et al. 2003, JCM 11314, strain ZF-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.