STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN12317.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (218 aa)    
Predicted Functional Partners:
SHM29655.1
PAS domain S-box-containing protein.
  
 0.972
SHM38373.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
 0.972
SHN00345.1
Signal transduction histidine kinase.
  
 0.951
SHM57869.1
Signal transduction histidine kinase.
   
 0.933
SHM96466.1
PAS domain S-box-containing protein.
   
 0.933
SHN00230.1
PAS domain S-box-containing protein.
   
 0.933
SHN00370.1
PAS domain S-box-containing protein.
   
 0.933
SHN00397.1
Two-component system, chemotaxis family, CheB/CheR fusion protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
   
 0.933
SHN12364.1
Histidine kinase.
 
  0.859
SHM00297.1
PAS fold-containing protein.
  
 0.844
Your Current Organism:
Flavobacterium xinjiangense
NCBI taxonomy Id: 178356
Other names: AS 1.2749, F. xinjiangense, Flavobacterium xinjiangense Zhu et al. 2003, JCM 11314, strain ZF-6
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