STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP21487.1Protein YcaR in KDO2-Lipid A biosynthesis cluster; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0434 family. (71 aa)    
Predicted Functional Partners:
AMP21486.1
acyl-CoA synthetase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.897
AMP23289.1
HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.774
AMP23637.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.695
AMP24258.1
acyl-ACP thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.654
AMP21480.1
ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.606
pheT
phenylalanyl-tRNA synthetase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.606
AMP23628.1
Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.591
AMP23624.1
Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.561
AMP26135.1
Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.557
AMP23622.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.481
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.