STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMP21527.1AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.637
AMP25099.1
Hydrogenase assembly protein HupF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.589
AMP25748.1
Tetratricopeptide repeat domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.585
AMP25746.1
Peptidase M52; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.547
AMP21529.1
Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.540
AMP21532.1
NHL repeat-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.534
AMP21530.1
Cytochrome-c3 hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.494
cobB
NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
 
    0.485
AMP21528.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.461
AMP21531.1
Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.433
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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