Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMP21529.1Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)    
Predicted Functional Partners:
AMP21530.1
Cytochrome-c3 hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.990
AMP21528.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.922
AMP25107.1
Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.921
AMP25746.1
Peptidase M52; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.897
AMP21531.1
Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.846
AMP25748.1
Tetratricopeptide repeat domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.840
AMP21532.1
NHL repeat-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.834
AMP25097.1
Hydrogenase assembly protein HupF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.781
AMP25101.1
Hydantoin utilization protein C; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.765
AMP24647.1
Rubredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the rubredoxin family.
  
 
 0.616
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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