Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMP21544.1 | AMP21594.1 | VC42_00435 | VC42_00785 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.965 |
| AMP21544.1 | AMP23491.1 | VC42_00435 | VC42_12965 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| AMP21544.1 | AMP24589.1 | VC42_00435 | VC42_19935 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.879 |
| AMP21544.1 | AMP24754.1 | VC42_00435 | VC42_21025 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Chemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.985 |
| AMP21544.1 | AMP25606.1 | VC42_00435 | VC42_26625 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| AMP21544.1 | rpoB | VC42_00435 | VC42_18670 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.408 |
| AMP21544.1 | rpoC | VC42_00435 | VC42_18675 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.537 |
| AMP21544.1 | rpoZ | VC42_00435 | VC42_25235 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.412 |
| AMP21594.1 | AMP21544.1 | VC42_00785 | VC42_00435 | RNA polymerase sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.965 |
| AMP21594.1 | AMP23491.1 | VC42_00785 | VC42_12965 | RNA polymerase sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.966 |
| AMP21594.1 | AMP24589.1 | VC42_00785 | VC42_19935 | RNA polymerase sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.754 |
| AMP21594.1 | AMP24754.1 | VC42_00785 | VC42_21025 | RNA polymerase sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | Chemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.717 |
| AMP21594.1 | AMP25606.1 | VC42_00785 | VC42_26625 | RNA polymerase sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.775 |
| AMP21594.1 | AMP26533.1 | VC42_00785 | VC42_27650 | RNA polymerase sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.732 |
| AMP21594.1 | rpoA | VC42_00785 | VC42_19220 | RNA polymerase sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.890 |
| AMP21594.1 | rpoB | VC42_00785 | VC42_18670 | RNA polymerase sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.953 |
| AMP21594.1 | rpoC | VC42_00785 | VC42_18675 | RNA polymerase sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.952 |
| AMP21594.1 | rpoZ | VC42_00785 | VC42_25235 | RNA polymerase sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.745 |
| AMP23491.1 | AMP21544.1 | VC42_12965 | VC42_00435 | Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| AMP23491.1 | AMP21594.1 | VC42_12965 | VC42_00785 | Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.966 |
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