STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMP21766.1Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)    
Predicted Functional Partners:
AMP21767.1
Oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.768
AMP24406.1
5,10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.721
AMP22872.1
Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.717
AMP21768.1
Epoxide hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.698
AMP22659.1
F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.695
AMP22172.1
Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.680
AMP23565.1
Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.645
AMP22857.1
Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.624
AMP23794.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.622
AMP25798.1
enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.614
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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