STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP25815.1Choline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)    
Predicted Functional Partners:
AMP22063.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.731
AMP23192.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.727
AMP24919.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.727
AMP26275.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.725
AMP25774.1
Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.664
AMP22425.1
(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.632
AMP21840.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.618
AMP25742.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.598
AMP25748.1
Tetratricopeptide repeat domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.598
AMP22584.1
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.598
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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