Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMP21890.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (977 aa)    
Predicted Functional Partners:
AMP21889.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.951
AMP24106.1
Secretion protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.727
acpP
Phosphopantetheine-binding protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
    
   0.700
AMP26258.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.642
AMP25960.1
Lipoprotein LprA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.616
AMP24258.1
acyl-ACP thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.583
AMP25419.1
Lipoprotein LprG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.557
AMP23961.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.541
AMP23641.1
PirG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.538
AMP24100.1
Secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.538
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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