STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP21896.1Na+/H+ antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)    
Predicted Functional Partners:
AMP25829.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.714
AMP24128.1
Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.593
AMP25828.1
NAD(P)H nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.541
AMP24009.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.504
AMP21720.1
S-adenosyl-L-methionine-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0312 family.
  
     0.485
AMP23864.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.441
AMP23895.1
HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.433
AMP21804.1
Secreted lipoprotein, ErfK/YbiS/YcfS/YnhG family; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.417
AMP22162.1
Na+/H+ transporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
   
 
 0.410
AMP26500.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.407
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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