Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMP21901.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)    
Predicted Functional Partners:
AMP21900.1
Phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.539
AMP22602.1
Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.534
AMP21919.1
Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.533
AMP25831.1
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.514
AMP21899.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.513
pheT
phenylalanyl-tRNA synthetase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.494
AMP25629.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.489
AMP21572.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.458
AMP23611.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.457
AMP22998.1
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.427
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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