STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP21905.1Peroxidase; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family. (435 aa)    
Predicted Functional Partners:
AMP25833.1
Peptidase M75; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.989
AMP21906.1
High-affinity Fe2+/Pb2+ permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.941
AMP23670.1
Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.766
AMP23233.1
Bacteriocin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.710
AMP23400.1
Lipoprotein LpqE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.678
AMP21904.1
Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.510
AMP25832.1
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.424
AMP21903.1
RNA polymerase sigma 70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
       0.422
AMP21859.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.419
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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