Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMP21908.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)    
Predicted Functional Partners:
AMP21911.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.809
AMP21909.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.808
AMP25835.1
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
     
 0.782
AMP21910.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AMP21912.1
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.
       0.752
AMP25629.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.617
AMP25994.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.610
cynS
Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
       0.533
AMP24354.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
AMP25836.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.513
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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