STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP25894.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (84 aa)    
Predicted Functional Partners:
AMP25891.1
Thiosulfate sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.787
AMP22167.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.618
AMP22168.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.563
AMP23350.1
4-hydroxy-2-oxopentanoic acid aldolase; Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta- cleavage pathway for the degradation of aromatic compounds. Belongs to the 4-hydroxy-2-oxovalerate aldolase family.
      
 0.550
AMP25958.1
Lipoprotein LprB; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.495
AMP23458.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.451
AMP22166.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.416
AMP22579.1
Lipoprotein LprC; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.410
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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