STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP22348.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)    
Predicted Functional Partners:
AMP25902.1
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.599
AMP25807.1
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.579
AMP22383.1
Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.
  
     0.570
AMP24933.1
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.554
AMP22347.1
Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.
       0.547
AMP23019.1
Toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.531
AMP23757.1
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.504
AMP24154.1
Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.497
AMP21597.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.484
AMP25534.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.431
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.