Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMP22373.1Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)    
Predicted Functional Partners:
AMP23921.1
Maltokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.997
AMP26206.1
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.940
AMP26191.1
Trehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.937
AMP21696.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.930
AMP22372.1
Group 2 truncated hemoglobin GlbO; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.929
AMP25777.1
4-alpha-glucanotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.926
AMP21982.1
4-alpha-glucanotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.926
AMP22954.1
Ribokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.925
AMP22231.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.693
AMP25973.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.693
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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