Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
AMP25934.1Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)    
Predicted Functional Partners:
AMP23633.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.949
AMP23922.1
Diacylglycerol acyltransferase/mycolyltransferase Ag85A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.928
AMP21718.1
Diacylglycerol acyltransferase/mycolyltransferase Ag85A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.925
AMP23636.1
Diacylglycerol acyltransferase/mycolyltransferase Ag85A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.920
AMP22398.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.770
AMP23637.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.487
AMP23628.1
Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.476
AMP25788.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.460
fabG
3-ketoacyl-ACP reductase; Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.458
AMP22492.1
3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.456
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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