STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP25960.1Lipoprotein LprA; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)    
Predicted Functional Partners:
AMP23590.1
Lipoprotein LpqH; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.831
AMP25264.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.643
AMP21890.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.616
AMP25418.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.598
AMP24106.1
Secretion protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.567
AMP25698.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.567
AMP24386.1
PaaX domain-containing protein, C- domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.565
AMP25501.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.559
AMP22582.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
AMP22325.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.554
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.