STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP22602.1Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (1134 aa)    
Predicted Functional Partners:
AMP25964.1
Lipoprotein LprE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.820
AMP22600.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.743
AMP26186.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.675
AMP26029.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.640
AMP22208.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.619
AMP24300.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.585
AMP25200.1
Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.584
AMP21901.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.561
AMP24697.1
ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.
 
 
 0.546
deaD
Cold-shock protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
  
    0.536
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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