STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMP22643.1Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)    
Predicted Functional Partners:
AMP22641.1
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
AMP22642.1
Nucleic-acid-binding protein containing a Zn-ribbon; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.995
AMP23357.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.991
AMP22863.1
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.968
AMP22644.1
Lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.945
AMP22864.1
Nucleic-acid-binding protein containing a Zn-ribbon; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.938
AMP23859.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.868
AMP24873.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.867
AMP22862.1
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.838
AMP22843.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.829
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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