STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP22659.1F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)    
Predicted Functional Partners:
AMP22658.1
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family.
     
 0.777
AMP21766.1
Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.695
AMP23817.1
Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.649
AMP23423.1
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.584
AMP22660.1
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.565
AMP23175.1
Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.563
AMP22286.1
Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.522
AMP22657.1
GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.509
AMP21812.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.492
AMP24881.1
FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.485
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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