Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
AMP22880.1Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)    
Predicted Functional Partners:
AMP22879.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.690
AMP25831.1
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.598
AMP22878.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.487
AMP23343.1
Ketosteroid isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.486
AMP23856.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.480
AMP24116.1
Bile acid 7-alpha dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.475
AMP22847.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.450
AMP23277.1
4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.438
AMP22959.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.413
AMP23127.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.404
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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