STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP23042.1Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)    
Predicted Functional Partners:
AMP23043.1
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.867
AMP23044.1
Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.803
AMP26047.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.726
AMP23045.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.638
moaA
Molybdenum cofactor biosynthesis protein MoeA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
       0.638
AMP22143.1
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
    0.596
AMP24532.1
Trehalose phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
   0.475
AMP24374.1
Alpha-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.442
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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