Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMP23098.1Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (72 aa)    
Predicted Functional Partners:
AMP23099.1
Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.
 
    0.944
AMP23097.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.730
AMP23073.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.725
AMP23173.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.718
AMP22448.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.692
AMP22474.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.674
AMP23110.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.621
AMP23127.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.620
AMP26013.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.611
AMP22908.1
3-ketoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.587
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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