STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMP23106.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)    
Predicted Functional Partners:
AMP25774.1
Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.860
AMP26021.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.846
AMP23107.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.846
AMP25659.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.846
AMP21821.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.843
AMP23291.1
Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.842
AMP25042.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.842
AMP23026.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.841
AMP23309.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.841
AMP24275.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.841
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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