STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP23206.1tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (377 aa)    
Predicted Functional Partners:
AMP23205.1
acyl-ACP desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.903
AMP23207.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.784
AMP24595.1
Septum formation inhibitor Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
 
   
 0.777
AMP26066.1
Transcriptional regulator, TetR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.724
AMP22653.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
   
  
 0.706
AMP22727.1
acyl-ACP desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.683
AMP23204.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.666
AMP21512.1
acyl-ACP desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.663
AMP23196.1
acyl-ACP desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.663
AMP23208.1
PhoU family transcriptional regulator; Plays a role in the regulation of phosphate uptake.
      0.640
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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