STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMP23497.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)    
Predicted Functional Partners:
AMP23496.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.990
AMP23499.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.979
AMP23495.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.964
AMP23498.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.946
AMP23500.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.784
AMP23501.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.780
AMP23494.1
glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.749
AMP24101.1
Secretion protein EccC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.522
AMP21923.1
MorD protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.503
AMP22685.1
Nitric oxide reductase activation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.503
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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