Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMP23532.1Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)    
Predicted Functional Partners:
AMP23530.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.830
AMP23531.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.830
AMP25831.1
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.624
AMP26019.1
Dihydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.623
AMP23856.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.579
AMP23529.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.564
AMP23173.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.550
AMP23127.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.547
AMP23524.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.520
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
     
 0.518
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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