Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMP23670.1Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)    
Predicted Functional Partners:
AMP23669.1
Nuclear export factor GLE1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.986
AMP22380.1
Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.899
AMP23400.1
Lipoprotein LpqE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.849
AMP23668.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.841
AMP22505.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.810
AMP23484.1
Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.798
AMP21905.1
Peroxidase; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
  
  
 0.766
AMP25612.1
CoA-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.723
AMP25676.1
CoA-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.723
AMP23232.1
Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.660
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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