STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP23670.1Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)    
Predicted Functional Partners:
AMP23669.1
Nuclear export factor GLE1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.980
AMP22380.1
Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.905
AMP25612.1
CoA-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.864
AMP25676.1
CoA-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.864
AMP23668.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.856
AMP23484.1
Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.799
AMP22505.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.793
AMP23400.1
Lipoprotein LpqE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.774
AMP21905.1
Peroxidase; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
  
  
 0.767
AMP23672.1
Ribonuclease; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions.
       0.640
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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