Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMP26142.1Secretion protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)    
Predicted Functional Partners:
AMP23688.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.963
AMP23685.1
Secretion protein EccA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.885
AMP23687.1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.875
AMP23686.1
Secretion protein EccE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.844
AMP23748.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.843
AMP21626.1
Secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.835
AMP21625.1
Secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.809
AMP23747.1
Secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.763
AMP22636.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.756
AMP24108.1
Secretion protein EccE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.732
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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