STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP26142.1Secretion protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)    
Predicted Functional Partners:
AMP23688.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.971
AMP23685.1
Secretion protein EccA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.889
AMP23687.1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.878
AMP23748.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.878
AMP21626.1
Secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.868
AMP23686.1
Secretion protein EccE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.852
AMP21625.1
Secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.845
AMP24108.1
Secretion protein EccE; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.842
AMP23689.1
Secretion protein EspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.784
AMP23747.1
Secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.763
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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