STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP23688.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)    
Predicted Functional Partners:
AMP26142.1
Secretion protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.971
AMP23689.1
Secretion protein EspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.875
AMP23685.1
Secretion protein EccA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.834
AMP23687.1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.829
AMP23686.1
Secretion protein EccE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.787
AMP23690.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.
   
 
 0.691
AMP23748.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.563
AMP24362.1
3-hydroxyacyl-ACP dehydratase; Functions as a heterodimer along with HadB in fatty acid biosynthesis; fatty acid synthase type II; FAS-II; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0336 family.
  
   
 0.479
AMP24290.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0336 family.
  
   
 0.464
AMP21594.1
RNA polymerase sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.454
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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