Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMP23753.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)    
Predicted Functional Partners:
AMP23752.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.777
leuS
leucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.751
AMP23641.1
PirG; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.699
AMP25225.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.688
AMP25463.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.671
AMP25464.1
Peptidase C40; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.656
AMP25526.1
Inv protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.594
AMP23751.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.488
AMP24754.1
Chemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.473
AMP25246.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.473
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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