STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP23808.1Formate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)    
Predicted Functional Partners:
AMP23838.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.697
AMP24607.1
Carbonic anhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.697
AMP22564.1
Carbonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.667
AMP23404.1
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
  
    0.667
AMP25413.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.667
AMP22565.1
Formate hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.632
AMP23681.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.536
AMP23661.1
Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.476
pheT
phenylalanyl-tRNA synthetase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.468
AMP22189.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.457
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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