STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selASelenocysteine synthase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (446 aa)    
Predicted Functional Partners:
selD
Segregation protein B; Synthesizes selenophosphate from selenide and ATP.
 
  
 0.996
AMP26171.1
Translation elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.986
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.928
AMP23832.1
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.823
AMP23833.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.787
AMP23831.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.780
AMP23834.1
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.715
AMP26047.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.658
AMP23837.1
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.591
AMP22558.1
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.462
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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