STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP23842.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)    
Predicted Functional Partners:
AMP23841.1
(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.814
AMP21771.1
Limonene-1,2-epoxide hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.573
AMP23967.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.528
AMP24831.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.489
AMP26296.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.469
AMP21900.1
Phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.459
AMP21784.1
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.455
AMP23840.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
AMP21641.1
C-5 sterol desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.443
AMP23108.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.436
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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