AMP23872.1 protein (Mycobacterium simiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AMP23872.1

Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (431 aa)

Predicted Functional Partners:

AMP22286.1

0.990

AMP23520.1

0.989

AMP23871.1

0.986

AMP23875.1

0.986

AMP23874.1

0.984

AMP25505.1

0.977

AMP21754.1

0.975

AMP23634.1

0.974

AMP23873.1

0.974

AMP22323.1

0.973

Your Current Organism:

Mycobacterium simiae

NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMP21754.1	AMP22286.1	VC42_01825	VC42_05480	fatty-acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
AMP21754.1	AMP23520.1	VC42_01825	VC42_13170	fatty-acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.882
AMP21754.1	AMP23871.1	VC42_01825	VC42_15475	fatty-acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
AMP21754.1	AMP23872.1	VC42_01825	VC42_15480	fatty-acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.975
AMP21754.1	AMP23873.1	VC42_01825	VC42_15485	fatty-acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.645
AMP21754.1	AMP23874.1	VC42_01825	VC42_15490	fatty-acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.933
AMP21754.1	AMP23875.1	VC42_01825	VC42_15495	fatty-acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
AMP21754.1	AMP25505.1	VC42_01825	VC42_25920	fatty-acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
AMP22286.1	AMP21754.1	VC42_05480	VC42_01825	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	fatty-acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
AMP22286.1	AMP22323.1	VC42_05480	VC42_05715	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA synthetase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AMP22286.1	AMP23520.1	VC42_05480	VC42_13170	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AMP22286.1	AMP23634.1	VC42_05480	VC42_13880	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	fatty-acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AMP22286.1	AMP23871.1	VC42_05480	VC42_15475	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AMP22286.1	AMP23872.1	VC42_05480	VC42_15480	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.990
AMP22286.1	AMP23873.1	VC42_05480	VC42_15485	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AMP22286.1	AMP23874.1	VC42_05480	VC42_15490	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
AMP22286.1	AMP23875.1	VC42_05480	VC42_15495	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.615
AMP22286.1	AMP25505.1	VC42_05480	VC42_25920	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AMP22323.1	AMP22286.1	VC42_05715	VC42_05480	acyl-CoA synthetase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AMP22323.1	AMP23520.1	VC42_05715	VC42_13170	acyl-CoA synthetase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963

page 1 of 6

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About