STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP23917.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)    
Predicted Functional Partners:
AMP23918.1
Elongation factor G; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.830
AMP22797.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.648
AMP24154.1
Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.629
AMP23871.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.610
AMP24374.1
Alpha-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.608
AMP22235.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.604
AMP21928.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.592
AMP23800.1
Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.589
AMP24111.1
Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.589
AMP24418.1
Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.589
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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