Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMP23997.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)    
Predicted Functional Partners:
AMP23996.1
Mce associated membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.793
AMP23999.1
Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.788
AMP23998.1
Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.780
AMP23994.1
Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AMP23995.1
Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AMP24000.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.733
AMP25958.1
Lipoprotein LprB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.652
AMP26203.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.461
AMP23989.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.461
AMP23990.1
MCE-family protein MCE1A; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.461
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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