STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMP24088.1Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)    
Predicted Functional Partners:
AMP26376.1
Fe3+-citrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.902
AMP24087.1
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.837
AMP24089.1
DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
AMP24086.1
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.760
AMP22599.1
Side tail fiber protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.554
AMP24085.1
Aminoglycoside 2'-N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.492
AMP23755.1
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.486
AMP24998.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.465
AMP24028.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.449
AMP24090.1
acyl-CoA synthetase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.442
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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