STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP24239.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa)    
Predicted Functional Partners:
AMP24240.1
Chorismate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.804
AMP24241.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.584
AMP21771.1
Limonene-1,2-epoxide hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.548
AMP23967.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.512
AMP26296.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.471
AMP21641.1
C-5 sterol desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.429
AMP22149.1
4-carboxy muconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.423
AMP26227.1
Steroid monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.409
AMP24791.1
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.407
AMP23908.1
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.400
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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