STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP24353.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (791 aa)    
Predicted Functional Partners:
AMP23583.1
Phosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.623
AMP24352.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.596
AMP22636.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.571
AMP22246.1
Mce associated membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.566
AMP26267.1
SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.
       0.525
AMP24749.1
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.513
AMP23338.1
Acetoacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.512
lysS
lysine--tRNA ligase; Catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
 
 0.510
AMP25225.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.506
AMP22584.1
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.487
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.