STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP24373.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)    
Predicted Functional Partners:
AMP24372.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.992
AMP26269.1
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.627
AMP26270.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.541
AMP26202.1
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.478
AMP22620.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.463
AMP26255.1
Delta-aminolevulinic acid dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ALAD family.
    
 0.444
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
    
 0.429
AMP24467.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.423
AMP21798.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.402
AMP25808.1
Methyltransferase type 12; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.402
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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